When the discionison of the near –the-end crisis and situation forced the repusiic to act against the separatist and even affected and involved the highacy elder mininsigtyry of light, the republic after learned about what the separatists had done to many alliances and palnets and orgainztions and cvizliagtions and species and indusigtals esp to torture hyperswimmmers and hyper-swimmers alliqanced using harmless holo-hydro-aqua-hyper-stasis hyperswimming water belly swim torture spasm arousel; the repusierlif the republic suddenly and without warning to the sperqatrist had deccraded civil war-the FINAL CIVIL WAR against the sepeeratist and had to dismandtle the underground insitiional hive overlord supervillain separatist force otherwise known as the separatist supervillain force, or known also as the overlord separatists; ultrovillain (this guy start out as a supervillain but turned into a superhero eventually) separatists. 

Once the Republic finally invaded badly repusited areas of Boka City, Atimoiia and also invaded several other areas on other palnets most done secrely to evade the enemy; infact even to target the enemy; etc; the clones, the Jedi, the MIB, the orburith completely ad soutely wiped out the influence even down to the chain of command and control of the sperqtiswt foces on millions and billions and googolplexes of sep control that they put an end to this civil war and slowly but carfully and secretly defeated and wiped and took over, take out and took down, overturn and ovderthruoghy the ancient but powerful chain of control,; in fact officially known as the chain of command, influence, control that the most powerful ally of the srepetrsits, the vorta, etc contorled and dictated and authority autocratically misused and abused and restrained and oppressed, suppressed, and repressed the one of largest quadtrand district terrorieies of the UCRC, the Vorta Providence, had been curreupted by polical andetc overabouse, overmisuse of power etc.

They send great massive warship and battleship spacecraft, spaceships, starships and motherships into battle AGAINST the wh;ich would be involvilng and or against rare butand elite high level ranking, member(S)  individuals, inhabitants citizens etc  of the Republic  and the Jedi and the Clones.